Core Facility – IDIP Infectious Diseases Imaging Platform

The Infectious Diseases Imaging Platform (IDIP) is a high-end microscopy core facility at the Center for Integrative Infectious Disease Research (CIID), University Hospital Heidelberg. IDIP provides cutting-edge imaging technologies under BSL-2 and BSL-3 conditions to support research on host-pathogen interactions across a wide range of spatiotemporal scales—from molecular dynamics to whole-organ imaging in living systems. The platform combines advanced microscopy with quantitative analysis to study rare and stochastic molecular events critical for understanding infectious processes.

The IDIP consists of 14 interconnected microscopy, tissue culture, and analysis rooms within over 250 m² of biosafety infrastructure and supports both basic and translational research through collaborative projects. We welcome new users and offer training, access to our instrumentation, and project-specific consultation. For more detailed information, please visit the official IDIP website:

IDIP Website

Project Request

Timeline of a project request at the IDIP: Registration, First Contact, Discussion, Training, Sample Preparation, Data Acquisition, Data Processing, Data Analysis
Create an IDIP Account

Fees & Important Notes

To keep the IDIP infrastructure operational it is necessary to raise necessary funds. This is partly done through user fees and partly through institutional and third party funding. Funds to cover usage fees can be requested as part of grant proposals to the DFG, the BMBF and the European Commission. Guidelines for requesting usage fees have been published by the DFG.

Different user fees apply for “internal”, “external” and “company” users. The user fees for internal users cover the specific, project-related, instrument operating costs, adaptations, upgrades and replacements, instrument-related consumables as well as project-specific staff costs within the framework of the applicable third-party funding agency guidelines. This is in accordance with the DFG guidelines for Research Infrastructure for Advanced Light Microscopy. Indirect costs (electricity, cleaning, general room maintenance, administration, etc.), routine instrument maintenance, instrument depreciation and costs of IDIP staff connected to routine infrastructure maintenance and VAT are not covered by fees for internal users. The fee for external users includes full operating and staff costs with 19% VAT, while fees for company users include indirect costs (40% overhead) and depreciation costs in addition. More details about the pricing and user fee system can be found in our User Fees Overview.

Who can become a user?

Internal Users

Primary IDIP users are members of the Center for Integrative Infectious Disease Research (CIID), Center for Infectious Diseases of the University Hospital Heidelberg and other members of Heidelberg University campus that need microscopy infrastructure under enhanced biosafety conditions. Members of organisations which co-finance IDIP infrastructure, such as the Heidelberg University Field of Focus 1 network and the German Center for Infection Research (Deutsches Zentrum für Infektionsforschung, DZIF), are also considered as “internal users”. A project can be conducted in IDIP if it fulfilles at least ONE of the following criteria:

  • The project requires BSL2/BSL3 containment
  • The project is in the field of infectious diseases research
  • There is no comparable instrumentation in other facilities on the campus

External and Company Users

The IDIP infrastructure is also open to “external users”. They include interested investigators from other academic research institutions and collaborators from industrial partners. 

How to become a user?

Prerequisites for access to IDIP:

  • ​Necessary biosafety training needs to be accomplished (level 2 or 3 depending on the pathogen and experimental setup used). For internal users the training is done by the respective PI and for the external users by IDIP staff.
  • Experiments with primary human or animal material that require evaluation by an Ethics committee can only be conducted after a respective Ethics vote has been obtained by the responsible Ethics Committee (in most cases the Ethics Committee of the University Hospital Heidelberg).
  • IDIP registration needs to be completed
  • Please also familiarize yourself with our rules and regulations

Services & Equipment

Services

The Infectious Diseases Imaging Platform (IDIP) provides advanced microscopy infrastructure under enhanced biosafety conditions (BSL-2 and BSL-3) to support infectious disease research. IDIP offers a comprehensive range of services, including:

  • Microscopy Infrastructure: Access to state-of-the-art imaging technologies for studies ranging from molecular to whole-organism levels.
  • Project Consultation: Expert advice on experimental design, instrument selection, and biosafety considerations.

  • Training and Education: Comprehensive training programs for users to ensure proficient and safe operation of equipment.
  • Data Acquisition and Analysis: Support in image acquisition, processing, and quantitative analysis, including assistance with software tools and automation workflows.
  • Collaborative Research: Facilitation of interdisciplinary projects, integrating microscopy data with other research modalities.

Equipment

Biosafety Level 2:

  • Leica SP8 DLS Laser Scanning Confocal SPIM
  • Leica Correlative Light Electron Microscopy workflow equipment (cryoCLEM)
  • Abberior Instruments STED/FLIM
  • PerkinElmer Spinning Disc Confocal
  • VisitronSystems Orbital-TIRF
  • ZEISS Airyscan 2 LSM900
  • CREST spinning disc with Nikon Ti2
  • MMI CellCut & CellManipulation
  • Image Analysis Workstations

Biosafety Level 3:

  • LaVision Biotec 2-Photon microscope
  • Leica THUNDER
  • CSU-W1 with Nikon Ti2 Spinning Disc Confocal
  • Luxendo InVi-SPIM
  • Nikon TiE
  • BD FACS Aria

Further Information on our Equipment

Team

Table

Black & white portrait of a man

Dr. Vibor Laketa
Head of Infectious Diseases Imaging Platform

+49 6221 56-34410
vibor.laketa@med.uni-heidelberg.de

Portrait of a smiling woman

Dr. Sylvia Olberg
Expertise: Point laser scanning confocal microscopy, TIRF microscopy, cell biology and parasitology

+49 6221 56-4789
sylvia.olberg@uni-heidelberg.de

Black & white portrait of a woman

Dr. Severina Klaus
Expertise: Super resolution microscopy (STED, Airyscan), live cell imaging, cell biology, virology, parasitology 

+49 6221 56-4789
severina.klaus@med.uni-heidelberg.de

Black & white portrait of a man

Dr. Alessandro Ulivi
Expertise: Multiphoton microscopy, morphological profiling, live cell imaging, image anaylsis

+49 6221 56-4789
alessandrofrancesco.ulivi@med.uni-heidelberg.de

Black & white portrait of a woman

Dr. Jessica Kehrer
Expertise: Spinning disc confocal microscopy, parasitology, biosafety, lasersafety

+49 6221 56-32241
jessica.kehrer@med.uni-heidelberg.de

Contact

Infectious Diseases Imaging Platfrom (IDIP)
Center for Integrative Infectious Diseases Research (CIID)
Im Neuenheimer Feld 344, 
69120 Heidelberg, 
Germany

Dr. Vibor Laketa
Tel: +49 6221 56 34410
Email: vibor.laketa@med.uni-heidelberg.de

Selected publications

Table

An extensive list of our publications can be found here:

IDIP Publications

Funding Resources

Funding for the IDIP platform: Cellnetworks, European Commision, DZIF, University of Heidelberg, Heidelberg University Clinic, SFB1129, DFG

Further Information on the IDIP

Short video: Interview with the Head of IDIP

Long video: Interview and IDIP tour